Carrasco, P.A., Grazziotin, F.B., Cruz Farfán, R.S., Koch, R., Ochoa, J.A., Scrocchi, G.J., Leynaud, G.C. & Chaparro, J.C. 2019. A new species of Bothrops (Serpentes: Viperidae: Crotalinae) from Pampas del Heath, southeastern Peru, with comments on the systematic of Bothrops neu. Zootaxa 4565 (3) , 301–344.
Gutiérrez, R.C., Chaparro, J.C., Vásquez, M.Y., Quiroz, A.J., Aguilar-Kirigin, A. y Abdala, C.S. 2018. Descripción y relaciones filogenéticas de una nueva especie de Liolaemus (Iguania: Liolaemidae) y notas sobre el grupo de L. montanus de Perú. . Cuadernos de herpetología. 32 (2) ,01–19.
Rojas, R.R., Fouquet, A., Tadeu de Carvalho, V., Ron, S., Chaparro, J.C., Vogt, R.C., Ávila, R.W., Farias, I.P., Gordo, M. and Hrbek, T. 2018. Redescription of the Amazonian tiny tree toad Amazophrynella minuta (Melin, 1941) (Anura: Bufonidae) from its type locality. . Zootaxa 4482 (3) ,511–526.
Ferretti, N., Cavallo, P., Chaparro, J.C., Ríos-Tamayo, D., Seimon, T.A. and West, R. 2018. The Neotropical genus Hapalotremus Simon, 1903 (Araneae: Theraphosidae), with the description of seven new species and the highest altitude record for. Journal of Natural History 52 ,1927–1984.
Rojas, R.R., Fouquet, A., Ron, S., Hernández-Ruiz, E.J., Melo Sampaio, P.L., Chaparro, J.C., Vogt, R.C., De Carvalho, V.T., Pinheiros, L.C., Ávila, 2018. A Pan-Amazonian species delimitation: high species diversity within the genus Amazophrynella (Anura: Bufonidae). . PeerJ 4941 ,1–56.
Mamani, L., Catenazzi, A., Ttito, A., Mallqui, S. and Chaparro, J.C. 2017. A new species of Bryophryne (Anura: Strabomantidae) from the Cordillera de Vilcabamba, southeastern Peruvian Andes. . Phyllomedusa 16 (2) ,129–141.
Womack, M.C., Christensen-Dalsgaard, J., Coloma L.A., Chaparro J.C. & Hoke K.L. 2017. Earless toads sense low frequencies but miss the high notes.. Proceedings of the Royal Society B 34 ,1-9.
De la Riva, I., Chaparro, J.C, Castroviejo–Fisher, S., & Padial, J.M. 2017. Underestimated anuran radiations in the high Andes: five new species, a new genus and their phylogenetic relationships (Anura: Craugastoridae). . Zoologica Journal of the Linnean Society 182 (1) ,129–172.
Serrano-Rojas, S.J., Withworth, A., Villacampa, J., von May, R., Gutiérrez, R.C., Padial, J.M, & Chaparro, J.C. 2017. A new species of poison-dart frog (Anura: Dendrobatidae) from Manu province, Amazon region of southeastern Peru, with notes on its natural history, bi. Zootaxa 4221 (1) ,071–094.
Motta, A.P., Chaparro, J.C., Guayasamin, J.M., Pombal, J.P., De la Riva, I. & Padial, J.M. 2016. Molecular Phylogenetics and Taxonomy of the Andean Genus Lynchius Hedges, Heinicke, and Duellman 2008 (Anura: Craugastoridae). . Herpetological Monographs 30 (1) ,119–142.
Ferretti, N., Ochoa, J.A. & Chaparro, J.C. 2016. Una nueva especie de Acanthoscurria (Araneae: Theraphosidae: Theraphosinae) sin órgano estridulatorio, del sur de Perú.. Revista Peruana de Biología 23 (2) ,089–094.
Ttito, A., Landauro, C., Venegas, P.J. and Chaparro, J.C. 2016. A new species of Telmatobius (Anura: Telmatobiidae) from the Cordillera Central of the Andes, Peru (Anura: Telmatobiidae) with description of its tadp. Annals of Carnegie Museum. 83 (4) ,. 255–268.
Carrasco, P.A., Venegas, P.J., Chaparro, J.C., Scrocchi, G.J. 2016. Taxonomic instability in the venomous snakes of the Bothrops complex: implications in toxinology and public health.. Toxicon 119 ,122–128.
Padial, J.M., Gagliardi, G., Chaparro, J.C. and Gutierrez, R. 2016. A new species of the Pristimantis conspicillatus group from the peruvian Amazon (Anura: Craugastoridae). . Annals of Carnegie Museum 83 (3) ,207–218.
Rojas, R.R., Chaparro, J.C., Tadeu De Carvalho, V., Ávila, R.W., Farias, I.P., Hrbek, T. and Gordo, M. 2016. Uncovering the diversity in the Amazophrynella minuta complex: integrative taxonomy reveals a new species of Amazophrynella (Anura, Bufonidae) from so. ZooKeys 563 ,43–71.
Chaparro, J.C., Condori, F.P., Mamani, L, & Deichmann, J. 2015. New geographic and elevational range extension of the rare Pristimantis divnae Lehr & von May, 2009 (Anura: Craugastoridae) in Peru.. Checklist 11 (5) ,1728
Chaparro, J.C, Padial, J.M., Gutierrez, R.C, & De la Riva, I. 2015. A new species of Andean frog of the genus Bryophryne from southern Peru (Anura: Strabomantidae), with notes on the diversity of the genus.. Zootaxa 3994 (1) ,94–108.
Mamani, L., Goicoechea, N, & Chaparro, J.C. 2015. A new species of Andean Lizard Proctoporus (Squamata: Gymnophthalmidae) from mountain forest of the National Sanctuary of Machupicchu. . Amphibian & Reptile Conservation 9 (1) ,1–11
Goicoechea, N., Padial, J.M., Chaparro, J.C., Castroviejo–Fisher, S, and De la Riva, I. 2013. A taxonomic revision of Proctoporus bolivianus Werner (Squamata: Gymnophthalmidae) with the description of three new species and resurrection of Proct. American Museum Novitates 3786 ,3786
Jungfer, K. H., Faivovich, J., Padial, J. M., Castroviejo-Fisher, S., Lyra, M. M., Berneck, B. V. M., Iglesias, P. P., Kok, P. Jr., MacCulloch, R. D., 2013. Systematics of spiny-backed treefrogs (Hylidae: Osteocephalus): an Amazonian puzzle. Zoologica Scripta 42 ,351-380.
Goicoechea, N., Padial, J.M., Chaparro, J.C., Castroviejo–Fisher, S, and De la Riva, I. 2012. Molecular phylogenetics, species diversity, and biogeography of the Andean lizards Proctoporus (Squamata: Gymnophthalmidae). . Molecular Phylogenetics and Evolution 65 ,953–964.
Padial, J.M., Chaparro, J.C., Castroviejo–Fisher, S., Guayasamin, J.M., Lehr, E., Delgado, A., Vaira, M., Aguayo, R. & De la Riva, I. 2012. Revisiting species diversity in the Neotropical genus Oreobates (Anura: Strabomantidae) using DNA barcodes and morphology, with the description of thr. American Museum Novitates 3752 ,1–55.
Chaparro, J.C., Motta, A.P., Gutiérrez, R.C. and Padial, J.M. 2012. A new species of Pristimantis (Anura: Strabomantidae) from Andean cloud forests of northern Peru. . Zootaxa 3192 ,39–48.
De la Riva, I., Castroviejo–Fisher, S., Chaparro, J.C., Boistel, R. and Padial, J.M. 2011. A new species of Atelopus (Anura: Bufonidae) from the Amazonian slopes of the Andes in south–eastern Peru. . Salamandra 47 (3) ,161–168.
Kohler, J., Koscinski, D., Padial, J.M., Chaparro, J.C., Handford, P., Lougheed, S.C. and De la Riva, I. 2010. Systematics of Andean gladiator frogs of the Hypsiboas pulchellus species group (Anura, Hylidae). . Zoologica Scripta 39 ,572–590.
Castroviejo–Fisher, S., Padial, J.M, Chaparro, J.C., Aguayo, R. and De la Riva, I. 2009. New species of Hyalinobatrachium (Anura: Centrolenidae) from the Amazonian slopes of the central Andes, with comments on the diversity of the genus in. Zootaxa 2143 ,24–44.
Padial, J. M., Chaparro, J.C., Kohler, J. and De la Riva, I. 2009. Rediscovery, resurrection and re–description of Rhinella leptoscelis (Boulenger, 1912) (Anura: Bufonidae). . Zootaxa 2115 ,56–64.
Padial, J. M., Castroviejo–Fisher, S., Köhler, J., Vilá, C., Chaparro, J.C. and De la Riva, I. 2009. Deciphering the products of evolution at the species level: the need for an integrative taxonomy. . Zoologica Scripta 38 ,431–447.
Miralles, A., Chaparro, J.C. and Harvey, M. 2009. Three rare and enigmatic South American Skinks.. Zootaxa 2012 ,47–68.
Duellman, W. E. and Chaparro, J.C. 2008. Two distinctive new species of Pristimantis, (Anura: Strabomantidae) from the Cordillera Oriental with a Distributional Synopsis of Strabomantids in C. Zootaxa 1918 ,13–25.
De la Riva, I. Chaparro, J.C. & Padial, J. M. 2008. A new, long–standing misidentified species of Psychrophrynella Hedges, Duellman & Heinicke from Departamento Cusco, Peru (Anura: Strabomantidae). . Zootaxa 1823 ,42–50.
Ochoa, J. A. & Chaparro, J.C. 2008. Nueva especie de escorpión del género Hadruroides (Scorpiones: Caraboctoninae) de los valles interandinos de Perú.. Revista Peruana de Biología 15 (1) ,1–6.
De la Riva, I. Chaparro, J.C. & Padial, J. M. 2008. The taxonomic status of Phyllonastes Heyer and Phrynopus peruvianus (Noble) (Lissamphibia, Anura): resurrection of Noblella Barbour. . Zootaxa 1685 ,67–68.
Padial, J. M. Chaparro, J.C. & De la Riva. 2008. Systematics of Oreobates and the Eleutherodactylus discoidalis species group (Amphibia, Anura), based on two mitochondrial DNA genes and external morp. Zoological Journal of the Linnean Society 152 ,737–773.
Padial, J. M. Chaparro, J.C. & De la Riva. 2008. Systematics of Oreobates and the Eleutherodactylus discoidalis species group (Amphibia, Anura), based on two mitochondrial DNA genes and external morp. Zoological Journal of the Linnean Society 152 ,737–773.
Chaparro, J.C., Padial, J.M. & De la Riva, I. 2008. Two sympatric new species of Phrynopus (Anura: Brachycephalidae) from Yanachaga Chemillén National Park (central Peruvian Andes). . Zootaxa 1761 ,49–58.
Chaparro, J.C., Pramuk, J.P., Gluesenkamp, A.G. and Frost, D.R. 2007. Secondary Homonymy of Bufo proboscideus Spix, 1824, with Phryniscus proboscideus Boulenger, 1882. Copeia 4 ,1029.
Chaparro, J.C., De la Riva, I., Ochoa, J.A. and Lehr, E. 2007. A new species of Phrynopus from Departamento Cusco, southern Peru (Anura: Brachycephalidae). . Zootaxa 1618 ,61–68.
Chaparro, J.C., Pramuk, J.P. and Gluesenkamp, A.G. 2007. A new species of arboreal Rhinella (Anura: Bufonidae) from cloud forest of southeastern Peru. . Herpetológica 63 (2) ,203–212.
Padial, J. M. Chaparro, J.C. & De la Riva, I. 2007. A new species of the Eleutherodactylus discoidalis group (Anura: Brachycephalidae) from cloud forest of Peru. . Herpetológica 63 (1) ,114–122.
Miralles, A., Barrio–Amorós, C., Rivas, G. & Chaparro–Auza, J.C. 2006. Speciation in the Varzéa flooded forest: a new Mabuya (Squamata, Scincidae) from Western Amazonia. . Zootaxa 1188 ,1–22.
De la Riva, I. & Chaparro, J.C. 2005. A new species of Hyla from cloud forests of southeastern Peru (Anura: Hylidae). . Amphibia–Reptilia 26 (4) ,515–521
Chaparro, J. C., Ochoa, J. A., Vitorino, J., Herrera, G., Mujica, O. y Silva, J. 2018. . Guía de campo, Flora & Fauna del Valle de Kosñipata. . Frankfurt Zoological Society - Perú ,1-195.
Chaparro, J.C., Alarcón, C., Condori C, F.P. and Deichmann, J.L. 2016. Madre de Dios - Amphibians and Reptiles of the Amarakaeri Communal Reserve. . Fieldguides of the Fieldmuseum [ 766
Padial, J.M., Gagliardi, G., Chaparro, J.C., Gutiérrez, R., Rojas, O. & CastroviejoFisher, S. 2016. Diversidad de anfibios y reptiles en el Parque Nacional Alto Purús, la Reserva Comunal Purús y sus áreas de influencia. Pp. 1–310. En diversidad . Publications of the World Wildlife Fund Inc.
Angulo, A., von May, R., Icochea, J., Chaparro, J.C., Hedges, S.B., Lehr, E., López, D.G., Lundberg, M. & Moravec, J. 2016. Parque Nacional Yanachaga-Chemillén, Pasco, Perú. ANFIBIOS del bosque de nubes y su zona de amortiguamiento.. Fieldguides of the Fieldmuseum 738
Chaparro, J.C. 2014. Anfibios y Reptiles. Pp. 78-94. En: Línea Base Biológica del Corredor de Conservación Manu - Tambopata: Lainez, D. (Edit). . Publicaciones de la Asociación para la Conservación de la Cuenca Amazonica (ACCA), Perú.
Gutiérrez, R.C., Chaparro, J.C., Vasquez, M.Y., Quiroz, A., & Langstroth, P. 2013. Diversidad y Abundancia de los Géneros Liolaemus y Proctoporus (Reptilia: Squamata); área de influencia del gasoducto Perú LNG en los departamentos. Publications of the Smithsonian Institution Scholarly Press, United States of America.
Gutiérrez, R.C., Chaparro, J.C., Vasquez, M.Y., Quiroz, A., & Langstroth, P. 2013. Taxonomy, Diversity, and Abundance of the Genera Liolaemus and Proctoporus (Reptilia: Squamata) in the Area of Influence of the PERU LNG Pipeline. Pp.. Publications of the Smithsonian Institution Scholarly Press, United States of America.
Chaparro, J.C., & Gutiérrez, R. 2009. Anfibios y reptiles. Pp. 123–147. En: J. Figueroa y M. Stucchi (edits). Biodiversidad de los alrededores de Puerto Maldonado Línea base ambiental E. IPyD Ingenieros y AICB. Lima, Perú, ,224 pp.
Navia, J.F & Chaparro, J.C. 2001. Anfibios y Reptiles de Machupicchu. . Revista Vía Láctea Cusco, Perú. 18
Ochoa, J.A; Achicahuala, J.L; & Chaparro, J.C. 1995. Distribución del Género Stenocercus (Tropiduridae) en el Departamento del Cusco. Revista Kente Cusco, Perú. 8